Structure-Based Discovery and Development of a Series of Potent and Selective Bromodomain and Extra-Terminal Protein Inhibitors

J Med Chem. 2019 Sep 26;62(18):8642-8663. doi: 10.1021/acs.jmedchem.9b01094. Epub 2019 Sep 16.

Abstract

BRD4 has recently emerged as a promising drug target. Therefore, identifying novel inhibitors with distinct properties could enrich their use in anticancer treatment. Guided by the cocrystal structure of hit compound 4 harboring a five-membered-ring linker motif, we quickly identified lead compound 7, which exhibited good antitumor effects in an MM.1S xenograft model by oral administration. Encouraged by its high potency and interesting scaffold, we performed further lead optimization to generate a novel potent series of bromodomain and extra-terminal (BET) inhibitors with a (1,2,4-triazol-5-yl)-3,4-dihydroquinoxalin-2(1H)-one structure. Among them, compound 19 was found to have the best balance of activity, stability, and antitumor efficacy. After confirming its low brain penetration, we conducted comprehensive preclinical studies, including a multiple-species pharmacokinetics profile, extensive cellular mechanism studies, hERG assay, and in vivo antitumor growth effect testing, and we found that compound 19 is a potential BET protein drug candidate for the treatment of cancer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antineoplastic Agents / pharmacology
  • Cell Cycle Proteins / metabolism
  • Cell Proliferation
  • Crystallography, X-Ray
  • Drug Design*
  • Drug Discovery
  • Humans
  • Inhibitory Concentration 50
  • Male
  • Mice
  • Mice, Inbred BALB C
  • Mice, Inbred ICR
  • Mice, Nude
  • Mice, SCID
  • Microsomes, Liver / metabolism
  • Molecular Structure
  • Neoplasm Transplantation
  • Neoplasms / drug therapy
  • Nuclear Proteins / antagonists & inhibitors
  • Peptides / chemistry*
  • Protein Domains
  • Proteins / antagonists & inhibitors*
  • Transcription Factors / antagonists & inhibitors

Substances

  • Antineoplastic Agents
  • Cell Cycle Proteins
  • Nuclear Proteins
  • Peptides
  • Proteins
  • Transcription Factors
  • bromodomain and extra-terminal domain protein, human